Quick start | Installation | Datasets | Example Methylation Data | Example Response Data | A quick work through of coMethDMR | Details of coMethDMR workflow | Genomic regions tested in gene based pipeline | When there are co-variate variables in dataset to consider | Algorithm for identifying co-methylated regions | Models for testing genomic regions against a continuous phenotype | Analyzing a specific gene | Frequently Asked Questions | Reference | Session Information

Introduction | Installation | Overview | Example Dataset | Analyzing One Type of Genomic Region via BiocParallel | Compute residuals | Finding co-methylated regions | Testing the co-methylated regions | coMethDMR Analysis Pipeline for 450k Methylation Arrays Datasets via BiocParallel | A Comment on Using EPIC Methylation Arrays Datasets | Additional Comments on Computational Time and Resources | Session Information

1 Installation | 2 Datasets | 3 Site-specific analysis | 3.1 Testing all edited sites | 3.2 Annotate results | 4 Region-based analysis | 4.1 Input regions | 4.2 Find close-by regions | 4.3 Find co-edited regions | 4.4 Summarize all regions | 4.5 Test all regions | 4.6 Annotate results | 5 Further examples of function TestAssociations in rnaEditr | 6 Session information