{
  "_id": "6acf4636d9de2f3f33fc9e7c",
  "Package": "ranktreeEnsemble",
  "Type": "Package",
  "Title": "Ensemble Models of Rank-Based Trees with Extracted Decision\nRules",
  "Version": "0.21",
  "Date": "2023-08-03",
  "Authors@R": "c(\nperson(\"Ruijie\", \"Yin\", role = \"aut\"),\nperson(\"Chen\", \"Ye\", role = \"aut\"),\nperson(\"Min\", \"Lu\", , \"luminwin@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-1386-1315\")))",
  "Maintainer": "Min Lu <luminwin@gmail.com>",
  "BugReports": "https://github.com/TransBioInfoLab/ranktreeEnsemble/issues/",
  "License": "GPL (>= 2)",
  "Description": "Fast computing an ensemble of rank-based trees via\nboosting or random forest on binary and multi-class problems.\nIt converts continuous gene expression profiles into ranked\ngene pairs, for which the variable importance indices are\ncomputed and adopted for dimension reduction. Decision rules\ncan be extracted from trees.",
  "URL": "https://github.com/TransBioInfoLab/ranktreeEnsemble/",
  "LazyData": "TRUE",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-14 08:08:29 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libx11-dev",
  "Repository": "https://transbioinfolab.r-universe.dev",
  "Date/Publication": "2024-05-24 00:39:17 UTC",
  "RemoteUrl": "https://github.com/transbioinfolab/ranktreeensemble",
  "RemoteRef": "HEAD",
  "RemoteSha": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
  "Author": "Ruijie Yin [aut],\nChen Ye [aut],\nMin Lu [aut, cre] (ORCID: <https://orcid.org/0000-0002-1386-1315>)",
  "_user": "transbioinfolab",
  "_type": "src",
  "_file": "ranktreeEnsemble_0.21.tar.gz",
  "_fileid": "https://r2.ropensci.org/a3eb6149bcf47c4d058a7affd27684a9a06d77b4037eb8efd97213579edf17c6",
  "_filesize": 744176,
  "_sha256": "a3eb6149bcf47c4d058a7affd27684a9a06d77b4037eb8efd97213579edf17c6",
  "_expires": "2027-01-22T09:06:56.000Z",
  "_created": "2026-10-14T08:08:29.000Z",
  "_published": "2026-10-14T09:07:02.173Z",
  "_buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115749368712,
      "time": 115,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11877954944"
    },
    {
      "job": 115749368569,
      "time": 156,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11878654159"
    },
    {
      "job": 115749368563,
      "time": 162,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11878826686"
    },
    {
      "job": 115749368688,
      "time": 151,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11879345200"
    },
    {
      "job": 115749368713,
      "time": 107,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11882090601"
    },
    {
      "job": 115749368729,
      "time": 476,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11879573145"
    },
    {
      "job": 115749368526,
      "time": 126,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11881143107"
    },
    {
      "job": 115749368493,
      "time": 396,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11879047198"
    },
    {
      "job": 115747901260,
      "time": 232,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11878429784"
    },
    {
      "job": 115749368572,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11879080602"
    },
    {
      "job": 115749368584,
      "time": 408,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11879805560"
    },
    {
      "job": 115749368714,
      "time": 168,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11879665182"
    },
    {
      "job": 115749368619,
      "time": 115,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11879350374"
    },
    {
      "job": 115749368609,
      "time": 396,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11879595842"
    },
    {
      "job": 115749368672,
      "time": 123,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11879455418"
    }
  ],
  "_upstream": "https://github.com/transbioinfolab/ranktreeensemble",
  "_commit": {
    "id": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
    "author": "Min Lu <luminwin@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md\n\ns",
    "time": 1716511157
  },
  "_maintainer": {
    "name": "Min Lu",
    "email": "luminwin@gmail.com",
    "login": "luminwin",
    "twitter": "@luminwin",
    "description": "Associate Professor of Biostatistics at the University of Miami",
    "uuid": 11638557,
    "orcid": "0000-0002-1386-1315"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.10",
      "role": "Imports"
    },
    {
      "package": "randomForestSRC",
      "role": "Imports"
    },
    {
      "package": "gbm",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "data.tree",
      "role": "Imports"
    }
  ],
  "_owner": "transbioinfolab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "luminwin",
      "count": 20,
      "uuid": 11638557
    }
  ],
  "_userbio": {
    "uuid": 51129358,
    "type": "organization",
    "name": "Translational Statistical Bioinformatics Lab",
    "followers": 26
  },
  "_downloads": {
    "count": 381,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ranktreeEnsemble"
  },
  "_devurl": "https://github.com/transbioinfolab/ranktreeensemble",
  "_searchresults": 9,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/ranktreeEnsemble.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/transbioinfolab/ranktreeensemble",
  "_realowner": "transbioinfolab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.21",
      "date": "2023-08-08"
    },
    {
      "version": "0.22",
      "date": "2023-08-18"
    },
    {
      "version": "0.23",
      "date": "2024-05-24"
    },
    {
      "version": "0.24",
      "date": "2025-09-14"
    }
  ],
  "_exports": [
    "extract.rules",
    "importance",
    "pair",
    "predict",
    "rboost",
    "rforest",
    "select.rules"
  ],
  "_datasets": [
    {
      "name": "tnbc",
      "title": "Gene expression profiles in triple-negative breast cancer cell",
      "object": "tnbc",
      "class": [
        "data.frame"
      ],
      "fields": [],
      "rows": 215,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "extract.rules",
      "title": "Extract Interpretable Decision Rules from a Random Forest Model",
      "topics": [
        "extract.rules"
      ]
    },
    {
      "page": "importance",
      "title": "Variable Importance Index for Each Predictor",
      "topics": [
        "importance"
      ]
    },
    {
      "page": "pair",
      "title": "Transform Continuous Variables into Ranked Binary Pairs",
      "topics": [
        "pair"
      ]
    },
    {
      "page": "predict",
      "title": "Prediction or Extract Predicted Values for Random Forest, Random Forest Rule or Boosting Models",
      "topics": [
        "predict"
      ]
    },
    {
      "page": "ranktreeEnsemble-package",
      "title": "Ensemble Models of Rank-Based Trees for Single Sample Classification with Interpretable Rules",
      "topics": [
        "ranktreeEnsemble"
      ]
    },
    {
      "page": "rboost",
      "title": "Generalized Boosted Modeling via Rank-Based Trees for Single Sample Classification with Gene Expression Profiles",
      "topics": [
        "rboost"
      ]
    },
    {
      "page": "rforest",
      "title": "Random Forest via Rank-Based Trees for Single Sample Classification with Gene Expression Profiles",
      "topics": [
        "rforest",
        "rforest.tree"
      ]
    },
    {
      "page": "select.rules",
      "title": "Select Decision Rules to Achieve Higher Prediction Accuracy",
      "topics": [
        "select.rules"
      ]
    },
    {
      "page": "tnbc",
      "title": "Gene expression profiles in triple-negative breast cancer cell",
      "topics": [
        "tnbc"
      ]
    }
  ],
  "_readme": "https://github.com/transbioinfolab/ranktreeensemble/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bit",
    "bit64",
    "bslib",
    "cachem",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "data.tree",
    "DiagrammeR",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "gbm",
    "generics",
    "glue",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "igraph",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "randomForestSRC",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "rlang",
    "rmarkdown",
    "rstudioapi",
    "sass",
    "scales",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "visNetwork",
    "vroom",
    "withr",
    "xfun",
    "yaml"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "ranktreeensemble",
  "_universes": [
    "transbioinfolab",
    "luminwin"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.21",
      "date": "2026-10-14T08:10:22.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/c62f2ae23ee6b7f5953008fc97ca7959ef00591650a852caedbb4d6bc0f5e301",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.21",
      "date": "2026-10-14T08:10:58.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/c7ab9ae3fc5eb01385c007626914bd28c5d81241293da573e8bc04c37664bce8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.21",
      "date": "2026-10-14T08:11:15.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/7b28e83658dd301b218522c1703041b62388482b87aaa4b0b6cdde3c063b465b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.21",
      "date": "2026-10-14T08:10:53.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/faac30e13097c4d739018429e6dd5e704980d7a0460c9be27feb23d355df430c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.21",
      "date": "2026-10-14T09:05:54.000Z",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/35e80eadb8e70fdd8cc0149ca9ba92053374e944a90393c7837431df1795017a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.21",
      "date": "2026-10-14T08:23:26.000Z",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/ad26fae608c43a21b54218d7c5eceda737ad37acbb120e049e72211d6cafa344",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.21",
      "date": "2026-10-14T08:54:58.000Z",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/61b15f88a0dd3562625d61f320747e45321a36d7e5a9c84a1daa825f62990540",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.21",
      "date": "2026-10-14T08:18:54.000Z",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/a6af0bea3ceaae0b7888343d0bddec9e4eebcc6c9daa04ec04a114c4437ee719",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.21",
      "date": "2026-10-14T08:11:07.000Z",
      "arch": "emscripten",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/01f85ee03995817bc2f143fd3a14a70599626804f67414f69b7cacdbdb529d33",
      "status": "success",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.21",
      "date": "2026-10-14T08:14:43.000Z",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/6b3df1df060cc28019ef4ee777895e452784a3a13eab9097c25c9580340d1592",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.21",
      "date": "2026-10-14T08:10:06.000Z",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/1a1b2d530220cd1b0ca8cbfb8d41b0eadf5ad27d23e34258cf3b978bf8fdda70",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.21",
      "date": "2026-10-14T08:09:57.000Z",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/668a8c4f8b13499478ba150dc9378ad5c371e2b27f5773851a225075c2f44ac9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.21",
      "date": "2026-10-14T08:14:19.000Z",
      "arch": "aarch64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/f79296d4d0a6d83f3513f62052b5a792aa16d22123609807f2b7ee93beb84861",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.21",
      "date": "2026-10-14T08:10:01.000Z",
      "arch": "x86_64",
      "commit": "277784d67bf80e946ce29865a69c9e9cd7f42f39",
      "fileid": "https://r2.ropensci.org/17f062ebc106b4f2b330de345a67256582c68122f7bd8310e5181f4c2c3900fe",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/transbioinfolab/actions/runs/38532597789"
    }
  ]
}